Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4077664 chr1:40506534 G/T 7.99E-5 174 24.85 22.3 25.35 KM Plot
PCPG rs4083246 chr7:105152545 C/T 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs41266975 chr2:241532559 G/C 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs41274094 chr10:69713871 G/A 0 176 25.87 18.2 2.28 KM Plot
PCPG rs41282950 chr20:6011934 C/T 0 177 25.47 23.08 2.93 KM Plot
PCPG rs4129403 chr5:179476610 A/G 0.000213 178 24.17 29.95 14.83 KM Plot
PCPG rs41296755 chr2:217059003 T/G 6.76E-5 176 24.7 30.45 2.93 KM Plot
PCPG rs4130692 chr1:56345824 C/A 0.000285 170 25.87 24.15 15.6 KM Plot
PCPG rs41313589 chr11:74174476 T/C 0 176 25.6 19.87 2.93 KM Plot
PCPG rs41332244 chr3:53282033 C/T 0.000174 178 25.17 27.27 26.73 KM Plot
PCPG rs41363748 chr12:56696056 C/T 9.51E-8 178 0.8 27.33 25.08 KM Plot
PCPG rs41392645 chr12:56696742 A/G 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs41423244 chr12:56693520 A/C 9.45E-8 178 0.8 27.3 25.17 KM Plot
PCPG rs4149375 chr2:24299534 AG/A 0.000113 177 25.4 27.52 17.43 KM Plot
PCPG rs419703 chr3:161087443 A/G 0.000268 172 25.87 19.85 3.17 KM Plot